Ok after testing for a few days it appears something odd had happened to my pocket pc. I closed Pocket Hackmaster and stopped it auto starting as well, then did a soft rest.
When I quit the game now, I know longer lose 1MB-3Mb of Ram, So I Set Pocket Hackmaster to Auto run again and soft rest.
Pocket Hackmaster now is ruuning again and the Game still works fine. I guess something got messed up some where in my PDA. Hope this helps anyone else that might get a problem like this.